VisR

VisR (formerly called VisRseq), is a framework for analysis of sequencing datasets that provides a computationally rich and accessible framework for integrative and interactive analyses without requiring programming expertise.

Features

• R Apps: Offering an auto generated and unified graphical user interface for computational packages in R and repositories such as Bioconductor.
• Interactive Apps: several native apps provide exploration and brushing operations.
• Chaining Apps: The apps can be chained together to create more powerful analysis workflows.
• Built-in genome browser integration: Integrated with the Integrative Genome Viewer (IGV).
• Data manipulation: Creating data tables and processing sequencing data into data columns.
• Computations on data columns: Using an excel or R syntax.

News

• June 26, 2016: Workshop on creating R-app for VisRseq at Bioc2016, Stanford University, CA. [package] [vignette]
• June 2016: VisRseq at the front page of the Canadian Epigenetics, Environment and Health Research Consortium (CEEHRC) Network website
• May 18, 2016: Invited talk in the visualization session of The Third International Conference on Mathematical and Computational Medicine, Columbus, OH [Slides] [Poster]